Interestingness #173
Description
Needed for semantic zooming.
The interestingness calculation needs to incorporate:
- large variants (>5kb, or configurable length)
- SNP from the list of 'known resistance mutations'
- NSY SNP/indel that phylogenetically converges in some meta-data field, for example DR. At the time of writing you don't have this information.
- NSY SNP/indel that has multiple independent evolutions in the phylogeny
- NSY SNP/indel not accounted in any other rule
- Rare SNP/indel (only occurs in <5% of strains). I don't know whether this is interesting or absolutely not, could go at bottom or top of the list. Number needs to be config option.
- Common SNP/indel (occurs in >75% of strains). I don't know whether this is interesting or absolutely not, could go at bottom or top of the list. Number needs to be config option.
- NSY SNP/indel that is phylogenetically inherited, i.e. only present in strains that come from the same ancestor
- SYN SNP (synonymous SNP)
non-variabele node - nodes with (majority) N's