setup.py

"""A setuptools based setup module.

See:
https://packaging.python.org/en/latest/distributing.html
https://github.com/pypa/sampleproject
"""

# To use a consistent encoding
from codecs import open
from os import path

# Always prefer setuptools over distutils
from setuptools import find_packages, setup

here = path.abspath(path.dirname(__file__))

# Get the long description from the README file
with open(path.join(here, 'README.rst'), encoding='utf-8') as f:
    long_description = f.read()

setup(
        name='MAGINE',
        version='0.0.1',
        description='Package to analyze biological data.',
        long_description=long_description,
        url='https://github.com/LoLab-VU/Magine',
        author='James Pino',
        author_email='james.ch.pino@gmail.com',
        license='MIT',

        # See https://pypi.python.org/pypi?%3Aaction=list_classifiers
        classifiers=[
            'Development Status :: 3 - Alpha',
        ],

        keywords=['biological networks', 'rnaseq', 'biological pathways',
                  'proteomics', 'metabolomics'],

        # You can just specify the packages manually here if your project is
        # simple. Or you can use find_packages().
    packages=find_packages(exclude=['docs']),

    install_requires=['jinja2',
                          'networkx',
                          'requests',
                          'pandas',
                          'xlrd',
                      'matplotlib',
                          'matplotlib-venn',
                          'bioservices',
                          'pathos',
                          'plotly'],

        test_suite='nose.collector',
        tests_require=['nose', 'coverage'],

        extras_require={
            'test': ['coverage'],
        },
        include_package_data=True,
        scripts=['scripts/create_template_project',
                 'scripts/download_databases.py'],

)