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Description
Currently, the mapper does not include transcript information in post-mapped metadata for accession-based score sets, so these score sets are skipped by the post-mapping UniProt job.
For accession-based score sets where the reference accession is a transcript, we should include cdna information (the transcript accession) in the post-mapped metadata.
Note that the transcript information is usually taken from the selected transcript. In this case, we don't select a transcript, since it was already provided, so we will need to take the transcript accession id from the provided score set metadata.
For accession-based score sets where the reference accession is a chromosome, we need to think about how to handle this. We will not have selected a transcript or been provided one. I believe we already do some work to get the HGNC gene id for this case, so maybe we could also get transcript information through that process.