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@CDCgov

Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.
README.md

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please fill out an issue on https://github.com/cdcgov/template logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 24 34

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    40 49

Repositories

Showing 10 of 524 repositories
  • prime-reportstream Public

    ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

    CDCgov/prime-reportstream’s past year of commit activity
    CSS 82 CC0-1.0 44 1,178 111 Updated Mar 2, 2026
  • neissflow Public

    Nextflow pipeline for Neisseria gonorrhoeae isolate genome analysis

    CDCgov/neissflow’s past year of commit activity
    Perl 5 Apache-2.0 2 6 0 Updated Mar 2, 2026
  • cdc-open-viz Public

    CDC OpenViz is a library of React packages for data visualization.

    CDCgov/cdc-open-viz’s past year of commit activity
    TypeScript 47 Apache-2.0 31 0 3 Updated Mar 3, 2026
  • forecasttools-py Public

    A Python package for common pre- and post-processing operations done by CFA Predict for short term forecasting, nowcasting, and scenario modeling.

    CDCgov/forecasttools-py’s past year of commit activity
    Python 11 Apache-2.0 3 17 8 Updated Mar 3, 2026
  • phoenix Public

    🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix’s past year of commit activity
    Python 95 Apache-2.0 36 10 0 Updated Mar 3, 2026
  • wastewater-informed-covid-forecasting Public

    Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub

    CDCgov/wastewater-informed-covid-forecasting’s past year of commit activity
    R 51 Apache-2.0 14 9 1 Updated Mar 3, 2026
  • NEDSS-Modernization Public
    CDCgov/NEDSS-Modernization’s past year of commit activity
    Java 25 7 0 14 Updated Mar 3, 2026
  • cfa-stf-routine-forecasting Public

    Models and infrastructure for forecasting respiratory disease hospitalizations using wastewater data with PyRenew.

    CDCgov/cfa-stf-routine-forecasting’s past year of commit activity
    Python 16 Apache-2.0 3 57 13 Updated Mar 2, 2026
  • stimulant_opioid_algorithm_medical_codes_R Public
    CDCgov/stimulant_opioid_algorithm_medical_codes_R’s past year of commit activity
    HTML 4 Apache-2.0 3 0 0 Updated Mar 2, 2026
  • Opioid_SUD_MHI_MedCodes Public

    Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

    CDCgov/Opioid_SUD_MHI_MedCodes’s past year of commit activity
    Python 7 8 0 0 Updated Mar 2, 2026
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