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MarieDenoulet/README.md

ORCID Research Gate LinkedIn Google Scholar CV HAL Web of science

Hey! Nice to see you

  • 🌻 I'm Marie, PostDoc at CRCI²NA in Nantes, France
  • 🔬 Biologist by training, programmer by passion 💻
  • 🧬 Specialized in (epi)genomics and cancer research
  • 🎓 During my PhD (CANTHER, ONCOLille), I worked on DNA methylation and breast cancer 🎗 and developed the ABSP tool 🛠
  • 📦 Currently developing muscadet, an R package for detecting somatic copy number alterations from single-cell multiomics
  • 🙌🏻 Passionate about Bioinformatics 📊, Reproducibility ⚙️, and Open Science 🔓
  • 🌱 Outside the lab, I enjoy reading 📖, painting 🎨, flower gardening 🌸, and knitting 🧶

📌 I work with

R Programming Docker GitHub Actions R Shiny Markdown GitHub YAML Git GitLab Reveal.js Bash Snakemake LaTeX Quarto

⭐️ Main projects

📎 Key resources and communications

muscadet poster ABSP publication PhD Thesis

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  1. ICAGEN/muscadet ICAGEN/muscadet Public

    Multiomics single-cell copy number alterations detection: an R package for CNA profiling in cancer cells, using one to multiple single-cell modalities.

    R 1 1

  2. ABSP-methylation-tool/ABSP ABSP-methylation-tool/ABSP Public

    Analysis of Bisulfite Sequencing PCR experiments, with R, to compute CpG methylation levels and identify methylation differences on specific DNA regions of interest.

    R 4