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@SUwonglab

The WH Wong lab at Stanford

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  1. ProVADA ProVADA Public

    ProVADA: conditional variant generation via ensemble-guided test-time steering

    Jupyter Notebook 5

  2. CausalEGM CausalEGM Public

    A General Causal Inference Framework by Encoding Generative Modeling

    Python 73 11

  3. PECA PECA Public

    PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data

    MATLAB 45 8

  4. scABC scABC Public

    HTML 21 5

  5. CoupledNMF CoupledNMF Public

    Coupled clustering of single cell genomic data

    Python 13 1

Repositories

Showing 10 of 25 repositories
  • IMED Public Forked from ghm17/IMED

    IMED is a statistical framework to perform Integrative Mutation and Expression analysis for Driver detection.

    SUwonglab/IMED’s past year of commit activity
    R 0 1 0 0 Updated Feb 20, 2026
  • carrier-stat Public Forked from ghm17/carrier-stat

    Carrier statistic is a statistical framework to prioritize disease-related rare variants by integrating gene expression data

    SUwonglab/carrier-stat’s past year of commit activity
    R 3 MIT 1 0 0 Updated Feb 18, 2026
  • ProVADA Public

    ProVADA: conditional variant generation via ensemble-guided test-time steering

    SUwonglab/ProVADA’s past year of commit activity
    Jupyter Notebook 5 0 0 0 Updated Dec 31, 2025
  • PECA Public

    PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data

    SUwonglab/PECA’s past year of commit activity
    MATLAB 45 8 6 1 Updated Oct 7, 2025
  • cRegulon Public

    cRegulon is an optimization model to identify combinatorial regulon from single cell expression and chromatin accessibility data.

    SUwonglab/cRegulon’s past year of commit activity
    Python 7 GPL-3.0 1 0 0 Updated Sep 28, 2025
  • rss-net Public

    RSS-NET: Regression with Summary Statistics exploiting Network Topology

    SUwonglab/rss-net’s past year of commit activity
    R 19 MIT 4 0 0 Updated Apr 23, 2025
  • arcsv Public

    Complex structural variant detection from WGS data

    SUwonglab/arcsv’s past year of commit activity
    Python 31 MIT 9 0 1 Updated Jan 9, 2025
  • AD-genomicLLM Public

    Associating genotype to imaging and clinical phenotypes of Alzheimer’s disease by leveraging genomic large language model

    SUwonglab/AD-genomicLLM’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Oct 25, 2024
  • CausalEGM Public

    A General Causal Inference Framework by Encoding Generative Modeling

    SUwonglab/CausalEGM’s past year of commit activity
    Python 73 11 1 0 Updated Jun 1, 2024
  • m2h-ele Public

    Sequence-conserved Enhancer-like Elements

    SUwonglab/m2h-ele’s past year of commit activity
    Shell 5 MIT 1 0 0 Updated Jan 2, 2024
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