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Add catalogue-based probe construction for OpenEphys #406

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Add catalogue-based probe construction for OpenEphys #406

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de879ef
draft
h-mayorquin Mar 11, 2026
56be30e
new test and bette error message
h-mayorquin Mar 11, 2026
8413732
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 11, 2026
d376bfc
test open ephys improvements
h-mayorquin Mar 11, 2026
73a3524
remove support for bad test
h-mayorquin Mar 11, 2026
84e7caa
Attempt at unification
h-mayorquin Mar 16, 2026
a1cc513
remove old function
h-mayorquin Mar 17, 2026
8704535
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 17, 2026
f5b1ee6
docstring
h-mayorquin Mar 17, 2026
a876a81
Merge remote-tracking branch 'refs/remotes/origin/separate_open_ephys…
h-mayorquin Mar 17, 2026
8dbfb5f
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 17, 2026
436edc2
improve string
h-mayorquin Mar 17, 2026
67768f7
warning to error
h-mayorquin Mar 17, 2026
1a4383f
Merge remote-tracking branch 'refs/remotes/origin/separate_open_ephys…
h-mayorquin Mar 17, 2026
a55ba4e
Merge branch 'main' into separate_open_ephys
alejoe91 Mar 17, 2026
b85af37
add back adc annotation for openephys, centralize adc annotation, add…
alejoe91 Mar 17, 2026
65723dc
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 17, 2026
764031e
wire probe with arange if oebin file is not provided
alejoe91 Mar 17, 2026
2261b52
Merge branch 'separate_open_ephys' of github.com:h-mayorquin/probeint…
alejoe91 Mar 17, 2026
bee6bcb
Handle case where oebin file doesn't have electrode_index
alejoe91 Mar 17, 2026
4a4d950
add josh siegle comment
h-mayorquin Mar 17, 2026
9e0f150
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 17, 2026
a568e89
add assumption on table
h-mayorquin Mar 17, 2026
e3f9099
better docstring
h-mayorquin Mar 17, 2026
f730224
make public method private
h-mayorquin Mar 17, 2026
c7b7796
add tests for non conventional electrode order
h-mayorquin Mar 17, 2026
b819f5c
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 17, 2026
4b7418a
bette stream path
h-mayorquin Mar 17, 2026
250ea6a
Merge remote-tracking branch 'refs/remotes/origin/separate_open_ephys…
h-mayorquin Mar 17, 2026
149f53a
require 'clean' stream_name
alejoe91 Mar 18, 2026
5757336
Re-order ADC contact annotations to match device_channel_index
alejoe91 Mar 18, 2026
8dbdbf0
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 18, 2026
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691 changes: 501 additions & 190 deletions src/probeinterface/neuropixels_tools.py
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8,105 changes: 8,105 additions & 0 deletions ...enephys/OE_Neuropix-PXI-NP1-binary/Record_Node_101/experiment1/recording1/structure.oebin
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493 changes: 493 additions & 0 deletions tests/data/openephys/OE_Neuropix-PXI-NP1-binary/Record_Node_101/settings.xml
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15,495 changes: 15,495 additions & 0 deletions .../OE_Neuropix-PXI-NP2-4shank-binary/Record_Node_101/experiment4/recording2/structure.oebin
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1,309 changes: 1,309 additions & 0 deletions tests/data/openephys/OE_Neuropix-PXI-NP2-4shank-binary/Record_Node_101/settings.xml
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7,729 changes: 7,729 additions & 0 deletions ...Neuropix-PXI-NP2-multishank-binary/Record_Node_109/experiment1/recording1/structure.oebin
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1,223 changes: 1,223 additions & 0 deletions tests/data/openephys/OE_Neuropix-PXI-NP2-multishank-binary/Record_Node_109/settings.xml
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7,848 changes: 7,848 additions & 0 deletions .../openephys/OE_OneBox-NP2014-binary/Record_Node_101/experiment1/recording1/structure.oebin
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536 changes: 536 additions & 0 deletions tests/data/openephys/OE_OneBox-NP2014-binary/Record_Node_101/settings.xml
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410 changes: 382 additions & 28 deletions tests/test_io/test_openephys.py
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