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Replace GFA parser

performance

refactoring

Status: Open.

#403 In marbl/MetagenomeScope;

· fedarko opened on Mar 19, 2026

Throw an error if an input node or edge name is prefixed with "--"

bug

Status: Open.

#402 In marbl/MetagenomeScope;

· fedarko opened on Mar 18, 2026

In Flye DOT graphs, associate edges with their reverse-complements based on edge ID

assemblersMaintaining compatibility with certain assemblers, showing unique information, etcMaintaining compatibility with certain assemblers, showing unique information, etc

lowpriorityfeature

Status: Open.

#401 In marbl/MetagenomeScope;

· fedarko opened on Mar 18, 2026

If Graphviz has "lost edges", log a warning explaining the situation

documentation

externalBugs / issues with other libraries/dependenciesBugs / issues with other libraries/dependencies

layoutgraph drawing / layoutgraph drawing / layout

lowpriorityfeature

refactoring

Status: Open.

#400 In marbl/MetagenomeScope;

· fedarko opened on Mar 11, 2026

Move bad-edge rescuing on selected nodes / edges to be set on cy init

refactoring

Status: Open.

#399 In marbl/MetagenomeScope;

· fedarko opened on Mar 10, 2026

rankdirs seem too large in recursive layout

bug

layoutgraph drawing / layoutgraph drawing / layout

Status: Open.

#398 In marbl/MetagenomeScope;

· fedarko opened on Mar 10, 2026

Dagre and fCOSE only work sometimes?

bug

externalBugs / issues with other libraries/dependenciesBugs / issues with other libraries/dependencies

layoutgraph drawing / layoutgraph drawing / layout

Status: Open.

#397 In marbl/MetagenomeScope;

· fedarko opened on Mar 10, 2026

Format control points distances and weights (to be passed to Cytoscape.js) better

codeissueNot quite bugs, but still issues with the code (e.g. style)Not quite bugs, but still issues with the code (e.g. style)

refactoring

Status: Open.

#396 In marbl/MetagenomeScope;

· fedarko opened on Mar 10, 2026

Add "pause" button for toast messages

lowpriorityfeature

Status: Open.

#395 In marbl/MetagenomeScope;

· fedarko opened on Mar 10, 2026

When a single edge is selected, add a little UI element for moving to its source or target node

lowpriorityfeature

Status: Open.

#393 In marbl/MetagenomeScope;

· fedarko opened on Mar 10, 2026

Weird blurring on canvas when selecting groups of nodes

externalBugs / issues with other libraries/dependenciesBugs / issues with other libraries/dependencies

styleCSS / graph stylingCSS / graph styling

testing

Status: Open.

#391 In marbl/MetagenomeScope;

· fedarko opened on Mar 5, 2026

Use blob-promise for exporting screenshots

externalBugs / issues with other libraries/dependenciesBugs / issues with other libraries/dependencies

performance

Status: Open.

#390 In marbl/MetagenomeScope;

· fedarko opened on Mar 3, 2026