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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. distributions distributions Public

    Makefile 5 11

  2. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 30

  3. docs docs Public archive

    Python 21 60

Repositories

Showing 10 of 81 repositories
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 2 4 1 Updated Mar 3, 2026
  • library-catalog Public

    Stores a list of the repos that are included in the QIIME 2 library

    qiime2/library-catalog’s past year of commit activity
    0 BSD-3-Clause 10 1 1 Updated Mar 3, 2026
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 5 BSD-3-Clause 11 6 7 Updated Mar 3, 2026
  • qiime2/q2-diversity-lib’s past year of commit activity
    Python 0 BSD-3-Clause 14 6 1 Updated Mar 3, 2026
  • q2-sample-classifier Public

    QIIME 2 plugin for machine learning prediction of sample data.

    qiime2/q2-sample-classifier’s past year of commit activity
    Python 6 BSD-3-Clause 34 15 (1 issue needs help) 1 Updated Mar 3, 2026
  • qiime2/action-library-packaging’s past year of commit activity
    Python 0 BSD-3-Clause 5 0 1 Updated Mar 2, 2026
  • q2cli Public

    Command line interface for QIIME 2

    qiime2/q2cli’s past year of commit activity
    Python 19 BSD-3-Clause 30 11 1 Updated Feb 28, 2026
  • qiime2/q2-composition’s past year of commit activity
    Python 6 BSD-3-Clause 29 8 3 Updated Feb 28, 2026
  • q2templates Public

    Design template package for QIIME 2 Plugins

    qiime2/q2templates’s past year of commit activity
    Python 4 BSD-3-Clause 15 0 2 Updated Feb 28, 2026
  • q2-vsearch Public

    vsearch plugin for QIIME 2

    qiime2/q2-vsearch’s past year of commit activity
    Python 6 BSD-3-Clause 21 8 0 Updated Feb 27, 2026