Skip to content
@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

Pinned Loading

  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.2k 258

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 488 112

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 399 70

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 407 75

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 330 41

Repositories

Showing 10 of 253 repositories
  • cellucid Public

    See every cell. Query any gene. Fly through millions. Zero friction.

    theislab/cellucid’s past year of commit activity
    JavaScript 3 BSD-3-Clause 0 0 0 Updated Feb 27, 2026
  • moscot-framework_reproducibility Public

    Data analysis for the moscot-framework project

    theislab/moscot-framework_reproducibility’s past year of commit activity
    Jupyter Notebook 20 6 1 0 Updated Feb 27, 2026
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI’s past year of commit activity
    Python 60 BSD-3-Clause 6 4 3 Updated Feb 27, 2026
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity
    Python 330 Apache-2.0 41 29 (1 issue needs help) 5 Updated Feb 27, 2026
  • single-cell-best-practices Public

    https://www.sc-best-practices.org

    theislab/single-cell-best-practices’s past year of commit activity
    Jupyter Notebook 1,152 258 77 5 Updated Feb 27, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 8 0 1 0 Updated Feb 27, 2026
  • DRVI_tutorials Public

    All the official tutorials for DRVI

    theislab/DRVI_tutorials’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Feb 27, 2026
  • cellucid-python Public

    The complete Python toolkit for Cellucid. Serve, export, document, explore.

    theislab/cellucid-python’s past year of commit activity
    Python 2 BSD-3-Clause 0 0 0 Updated Feb 27, 2026
  • cellink Public

    Scalable framework for integrating single-cell omics with genetic data using AnnData.

    theislab/cellink’s past year of commit activity
    Python 13 Apache-2.0 2 5 4 Updated Feb 26, 2026
  • scvelo Public

    RNA Velocity generalized through dynamical modeling

    theislab/scvelo’s past year of commit activity
    Python 488 BSD-3-Clause 112 72 5 Updated Feb 25, 2026
View all repositories

Top languages

Loading…

Most used topics

Loading…