Platform for integrating genomic analysis with Jupyter Notebooks.
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Jul 25, 2025 - Python
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genepattern
Here are 12 public repositories matching this topic...
The GenePattern Server web application
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Feb 19, 2026 - HTML
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Jun 21, 2022 - Jupyter Notebook
Modular toolkit for data analysis pipelines used at Baylor⚕️
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Jul 21, 2024 - TypeScript
Code used in the operation of the GenePattern Notebook Repository
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May 18, 2022 - Python
Multi-agent AI pipeline that turns any bioinformatics CLI tool into a production-ready GenePattern module.
python bioinformatics genomics reproducible-research multi-agent scientific-computing code-generation ucsd workflow-automation genepattern ai-agents cli-tools llm pydantic-ai module-generation
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Mar 13, 2026 - Python
Launches a GenePattern visualizer from the desktop
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Mar 2, 2022 - Java
Example notebooks utilizing the GenePattern Notebook environment.
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Oct 7, 2021 - Jupyter Notebook
A standard template repository for creating GenePattern Notebook based analyses.
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May 25, 2018 - Jupyter Notebook
A version of Single Sample GSEA adapted to the sparsity of single cell RNA-seq data
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Aug 21, 2025 - Python
MCP server that lets AI assistants (Claude, Cursor, Copilot) run GenePattern bioinformatics modules, manage cloud jobs, and access genomic data — all through natural language.
python docker bioinformatics ai genomics reproducible-research mcp gene-expression single-cell ucsd genepattern llm model-context-protocol fastmcp
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Mar 6, 2026 - Python
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