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standardize local modules

enhancementNew feature or requestNew feature or request

Status: Open.

#278 In nf-core/variantbenchmarking;

· kubranarci opened on Feb 27, 2026

truvari_benchmark

enhancementNew feature or requestNew feature or request

not urgent

wontfixThis will not be worked onThis will not be worked on

Status: Open.

#274 In nf-core/variantbenchmarking;

· georgiakes opened on Feb 17, 2026

apply strict-syntax-health

high priority

Status: Open.

#271 In nf-core/variantbenchmarking;

· kubranarci opened on Feb 9, 2026

Add rtgtools/cnveval

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#266 In nf-core/variantbenchmarking;

· georgiakes opened on Jan 22, 2026

Port local subworkflows to nf-core/modules

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#265 In nf-core/variantbenchmarking;

· georgiakes opened on Jan 22, 2026

Port local modules to nf-core/modules

enhancementNew feature or requestNew feature or request

Status: Open.

#264 In nf-core/variantbenchmarking;

· georgiakes opened on Jan 22, 2026

Add unit tests and documentation to local modules and subworkflows

enhancementNew feature or requestNew feature or request

Status: Open.

#257 In nf-core/variantbenchmarking;

· kubranarci opened on Dec 1, 2025

check if BED follows standard format of 0 indexing

enhancementNew feature or requestNew feature or request

Status: Open.

#256 In nf-core/variantbenchmarking;

· kubranarci opened on Dec 1, 2025

add TP_comp for sompy

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

#233 In nf-core/variantbenchmarking;

· kubranarci opened on Oct 14, 2025

unexpected F1 score running somatic snv/indel variants benchmarking

bugSomething isn't workingSomething isn't working

Status: Open.

#225 In nf-core/variantbenchmarking;

· gianfilippo opened on Sep 29, 2025

Multiple truth sets within the same run

enhancementNew feature or requestNew feature or request

not urgent

Status: Open.

#202 In nf-core/variantbenchmarking;

· fellen31 opened on Jun 5, 2025

add vcfdist tool for benchmarking

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#199 In nf-core/variantbenchmarking;

· kubranarci opened on Jun 3, 2025